In Wang-Cankun/Bobro: Bobro R package

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Bobro

Bobro is the an R package for prediction of cis-regulatory motifs in a given set of promoter sequences. The algorithm originally published by Ma et al, 2011 at Nucelic Acids Research(https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkq948). This package provides an R implementation of the Bobro algorithm, developed and maintained by the BMBL at OSU.

Make sure to check out the Examples and FAQ section to learn everything about the workflow.

Latest News

• to-do

Requirements

• R (>= 3.5.1)
• Windows, MacOS, Linux

Installation

You can install Bobro R package with:

library(remotes)
# to install the latest stable version (advised)
remotes::install_github("Wang-Cankun/Bobro")

Examples

• see to-do

FAQ

Howto’s and faqs examples:

• to-do

References

• Guojun Li, Bingqiang Liu, Qin Ma, Ying Xu, [A new framework for identifying cis-regulatory motifs in prokaryotes] (https://academic.oup.com/nar/article/39/7/e42/1151705), Nucleic Acids Research, Volume 39, Issue 7, 1 April 2011, Page e42, https://doi.org/10.1093/nar/gkq948

Wang-Cankun/Bobro documentation built on Feb. 23, 2020, 5:40 a.m.