DefaultDimReduc: Find the default DimReduc
In Wang-Cankun/rDeepMAPS: IRIS3-api
Description
Usage
Arguments
Value
Author(s)
References
Description
Searches for DimReducs matching 'umap', 'tsne', or 'pca',
case-insensitive, and in that order. Priority given to
DimReducs matching the DefaultAssay or assay specified
(eg. 'pca' for the default assay weights higher than
'umap' for a non-default assay)
Usage
1
DefaultDimReduc(object, assay = NULL)
Arguments
object
A Seurat object
assay
Name of assay to use;
defaults to the default assay of the object
Value
The default DimReduc, if possible
Author(s)
Paul Hoffman
References
https://github.com/satijalab/seurat-wrappers/wiki/Code-Guidelines
Wang-Cankun/rDeepMAPS documentation built on Jan. 28, 2022, 7:10 a.m.
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Description Usage Arguments Value Author(s) References
Description
Searches for DimReducs matching 'umap', 'tsne', or 'pca', case-insensitive, and in that order. Priority given to DimReducs matching the DefaultAssay or assay specified (eg. 'pca' for the default assay weights higher than 'umap' for a non-default assay)
Usage
1 | DefaultDimReduc(object, assay = NULL)
|
Arguments
object |
A Seurat object |
assay |
Name of assay to use; defaults to the default assay of the object |
Value
The default DimReduc, if possible
Author(s)
Paul Hoffman
References
https://github.com/satijalab/seurat-wrappers/wiki/Code-Guidelines
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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