load_multiome: Load matched scRNA-seq and scATAC-seq data to Seurat / Signac

In Wang-Cankun/rDeepMAPS: IRIS3-api

Description

Load matched scRNA-seq and scATAC-seq data to Seurat / Signac

Usage

load_multiome(
  req,
  idx = 0,
  filename,
  jobid = "example",
  mode = "RNA",
  min_cells = 0.001,
  min_counts = 20000,
  removeOutlier = T,
  nVariableFeatures = 2000,
  percentMt = 0.25,
  percentRb = 0.5,
  expr = NULL,
  label = NULL,
  species = "Human",
  destination = NULL
)

Arguments

req	request payload
idx	sample index
filename	string
mode	string
min_cells	number
min_counts	number
removeOutlier	boolean
nVariableFeatures	number
percentMt	number

Value

list of basic QC metrics

Wang-Cankun/rDeepMAPS documentation built on Jan. 28, 2022, 7:10 a.m.