Reference class to store the results from sequence similarity analyses, and block detection runs for a given triplet.
TableFile
A length 1 character vector storing the temporary filepath of the datatable of sequence similarity table.
Table
Accessor function for the datatable of sequence similarity that is stored on temporary files.
WindowSizeUsed
Single integer value, stores the size of the sliding window used for the scan.
StepSizeUsed
Single integer value, stores the size of the sliding window used for the scan.
blankTable()
Method clears the SS analysis results table.
finalize()
Called when the object is destroyed, makes sure to delete the file saved in the system's temporary directory.
initialize(HCDir)
Method initializes the object, generates temporary filenames for the sequence similarity table.
tableIsBlank()
Returns TRUE, if the SS analysis table is blank and no results are contained in it.
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