fourTaxonTest: fourTaxonTest
In Ward9250/HybridCheck: Detection and dating of Recombinant Regions in DNA sequence data
Description
Computes the Four Taxon Test for a given set of P1, P2, P3, and P4.
Patterson's D is calculated, as is Fd from the paper Martin et al. (2014).
Fd is calculated for the scenario of complete introgression between P1 and P3,
and also for the scenario of complete introgression between P2 and P3.
The jack-knife implementation and computation of Z scores is based on that used in the software package
ANGSD.
Usage
1
fourTaxonTest(dna, fttRecord, numBlocks, lengthOfBlocks)
Ward9250/HybridCheck documentation built on Jan. 30, 2022, 11:01 a.m.
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Description
Computes the Four Taxon Test for a given set of P1, P2, P3, and P4. Patterson's D is calculated, as is Fd from the paper Martin et al. (2014). Fd is calculated for the scenario of complete introgression between P1 and P3, and also for the scenario of complete introgression between P2 and P3. The jack-knife implementation and computation of Z scores is based on that used in the software package ANGSD.
Usage
1 | fourTaxonTest(dna, fttRecord, numBlocks, lengthOfBlocks)
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R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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