Files in Waschina/Eutropia
Agent-based modelling of microbial communities in time and continuous µ-meter-scale space
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
Eutropia.Rproj
LICENSE
LICENSE.md
NAMESPACE
R/Eutropia-package.R
R/Exoenzyme.R
R/Organism.R
R/RcppExports.R
R/adjust_uptake.R
R/assortment.R
R/growthEnvironment.R
R/growthSimulation.R
R/run_simulation.R
R/scavenge_compounds.R
R/sysBiolAlg_mtfClass2.R
R/visualisation.R
README.md
_pkgdown.yml
inst/extdata/bilo.RDS
inst/extdata/eure.RDS
inst/extdata/iML1515.xml
inst/extdata/kiel.csv
inst/extdata/medium.csv
inst/extdata/zymo-medium.csv
inst/extdata/zymo.RDS
man/Exoenzyme-class.Rd
man/Organism-class.Rd
man/add_compound_gradient.Rd
man/add_compounds.Rd
man/add_exoenzyme.Rd
man/add_organism.Rd
man/calc_assortment.Rd
man/dilute_compounds.Rd
man/growthEnvironment-class.Rd
man/growthSimulation-class.Rd
man/init_simulation.Rd
man/plot_cells.Rd
man/plot_compounds.Rd
man/plot_environment.Rd
man/plot_environment_exoenzymes.Rd
man/plot_growth.Rd
man/run_simulation.Rd
man/show-growthSimulation-method.Rd
man/summary_exchanges.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/diffChange.cpp
vignettes/.gitignore
vignettes/Crossfeeding.Rmd
