plot_cells: Plot spatial distribution of cells

In Waschina/Eutropia: Agent-based modelling of microbial communities in time and continuous µ-meter-scale space

Plot spatial distribution of cells

Description

Plots the distribution of cells in a growth simulation.

Usage

plot_cells(
  object,
  xlim = NULL,
  ylim = NULL,
  iter = NULL,
  scalebar.color = "white",
  background.color = "black",
  incl.timestamp = TRUE,
  legend.position = "bottom",
  plot.title = NULL
)

Arguments

object	S4-object of type growthSimulation.
xlim	Numeric vector of length 2, specifying the x-range to be displayed.
ylim	Numeric vector of length 2, specifying the y-range to be displayed.
iter	Positive integer number of the simulation step/iteration to plot the cell distribution. If NULL, current distribution is displayed.
scalebar.color	Color of the scale bar and its annotation. Default: "white".
background.color	Color of the growth environment background.
incl.timestamp	Boolean indicating whether a time stamp should be included in the plot. Default: TRUE
legend.position	The position of legends ("none", "left", "right", "bottom", "top", or two-element numeric vector), as handled in ggplot2. Default: "bottom"
plot.title	An optional title written on top of the plot.

Value

A ggplot object.

Waschina/Eutropia documentation built on Jan. 4, 2023, 12:42 p.m.