Man pages for Waschina/Eutropia
Agent-based modelling of microbial communities in time and continuous µ-meter-scale space
| add_compound_gradient | Add compounds to the growth environment in a gradient |
| add_compounds | Add compounds to the growth environment |
| add_exoenzyme | Add an exoenzyme to organism and simulation |
| add_organism | Add a model/organism to simulation |
| calc_assortment | Calculate spatial segregation and assortment |
| dilute_compounds | Dilute compounds |
| Exoenzyme-class | Structure of the S4 class "Exoenzyme" |
| growthEnvironment-class | Structure of the S4 class "growthEnvironment" |
| growthSimulation-class | Structure of the S4 class "growthSimulation" |
| init_simulation | Initialize a growth simulation. |
| Organism-class | Structure of the S4 class "Organism" |
| plot_cells | Plot spatial distribution of cells |
| plot_compounds | Plot compound time curves |
| plot_environment | Plot spatial distribution of compounds |
| plot_environment_exoenzymes | Plot spatial distribution of exoenzymes |
| plot_growth | Plot growth curves |
| run_simulation | Run simulation |
| show-growthSimulation-method | Print a short summary of a growth simulation |
| summary_exchanges | Summary of uptake / production by organism type |
