get_expected_cell: Get the nearest neighboring cells
In WeiqiangZhou/SCDV: Single cell differential variance analysis
Description
This function allows you to get the nunmber of nearest neighbor used for estimating dropout.
Usage
1
2
get_expected_cell(data_count, gene_len_org, neighbor_num = NULL,
max_num = 20, scale_factor = 1e+06)
Arguments
data_count
Input count matrix.
gene_len_org
A vector for the length of genes in coding regions
neighbor_num
Number of nearest neighboring cells to use. If NULL, the number will be selected automatically
max_num
Maximum number of nearest neighboring cells for automatic selection
scale_factor
Global scale factor for normalizing the nearest neighboring cells
WeiqiangZhou/SCDV documentation built on May 17, 2019, 12:04 p.m.
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Description
This function allows you to get the nunmber of nearest neighbor used for estimating dropout.
Usage
1 2 | get_expected_cell(data_count, gene_len_org, neighbor_num = NULL,
max_num = 20, scale_factor = 1e+06)
|
Arguments
data_count |
Input count matrix. |
gene_len_org |
A vector for the length of genes in coding regions |
neighbor_num |
Number of nearest neighboring cells to use. If NULL, the number will be selected automatically |
max_num |
Maximum number of nearest neighboring cells for automatic selection |
scale_factor |
Global scale factor for normalizing the nearest neighboring cells |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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