In WendyLiuLab/BiactivationFlow: What the package does (short line)

library(FlowAnalysis)
library(magrittr)
library(dplyr)
library(ggplot2)
names(m1_m2)
names(m1_sus_m2)

2D density plots

Wash-out

m1_m2 %>% filter(antibody=="exp") %>% render_density_plots()

M1 sustained

m1_sus_m2 %>% filter(antibody=="exp") %>% render_density_plots()

Median plots

Wash-out

For each experiment:

m1_m2_medians = make_medians(m1_m2)
render_median_plots(m1_m2_medians)

Summarized:

normalized_m1_m2 = normalize_by_positive_controls(m1_m2)
normalized_m1_m2_medians = make_medians(normalized_m1_m2)
render_summary_median_plots(normalized_m1_m2_medians)

M1 sustained

For each experiment:

m1_sus_m2_medians = make_medians(m1_sus_m2)
render_median_plots(m1_sus_m2_medians)

Summarized:

normalized_m1_sus_m2 = normalize_by_positive_controls(m1_sus_m2)
normalized_m1_sus_m2_medians = make_medians(normalized_m1_sus_m2)
render_summary_median_plots(normalized_m1_sus_m2_medians)

WendyLiuLab/BiactivationFlow documentation built on May 9, 2019, 10:56 p.m.