Files in WendyLiuLab/BiactivationFlow
What the package does (short line)
.Rbuildignore
.gitignore
DESCRIPTION
FlowAnalysis.Rproj
R/FlowAnalysis.R
R/datasets.R
R/hacks.R
README.md
client-code/.gitignore
client-code/quadplots.R
client-code/result-illustrations.Rmd
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-003-95/Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-07/Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-21-1/export_Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m1-m2/tds-004-22-2/rename.py
data-raw/m1-sus-m2/20151026/export_Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/20151026/export_Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/20151026/export_Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/20151026/export_Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/20151026/export_Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/20151026/export_Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/20151026/rename.py
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-16-1/export_Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-1/export_Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-23-3/export_Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-25-3-1/export_Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-25-3-1/export_Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-25-3-1/export_Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-25-3-1/export_Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-25-3-1/export_Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-25-3-1/export_Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m1-sus-m2/tds-004-25-3-1/rename.py
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-05/Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_03x1.exported.FCS3.csv
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data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-15-3/fixup.py
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m2-m1/tds-004-21-2/export_Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-08-3/Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-15/fixup.py
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0x0_1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0x0_3.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_unstained-0_3x1.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/m2-sus-m1/tds-004-22-1/Specimen_001_unstained-0x1.exported.FCS3.csv
data-raw/modeling/MISA_IFFL_time_course.csv
data-raw/preprocess.R
data-raw/pulse-chase/20151206/24h-0_3x0-exp.csv
data-raw/pulse-chase/20151206/24h-0_3x1-exp.csv
data-raw/pulse-chase/20151206/24h-0_3x1-iso.csv
data-raw/pulse-chase/20151206/24h-0x0-exp.csv
data-raw/pulse-chase/20151206/24h-0x0-iso.csv
data-raw/pulse-chase/20151206/24h-0x1-exp.csv
data-raw/pulse-chase/20151206/48h-0_3x0-exp.csv
data-raw/pulse-chase/20151206/48h-0_3x1-exp.csv
data-raw/pulse-chase/20151206/48h-0_3x1-iso.csv
data-raw/pulse-chase/20151206/48h-0x0-exp.csv
data-raw/pulse-chase/20151206/48h-0x0-iso.csv
data-raw/pulse-chase/20151206/48h-0x1-exp.csv
data-raw/pulse-chase/20151206/72h-0_3x0-exp.csv
data-raw/pulse-chase/20151206/72h-0_3x1-exp.csv
data-raw/pulse-chase/20151206/72h-0_3x1-iso.csv
data-raw/pulse-chase/20151206/72h-0x0-exp.csv
data-raw/pulse-chase/20151206/72h-0x0-iso.csv
data-raw/pulse-chase/20151206/72h-0x1-exp.csv
data-raw/pulse-chase/20151206/96h-0_3x0-exp.csv
data-raw/pulse-chase/20151206/96h-0_3x1-exp.csv
data-raw/pulse-chase/20151206/96h-0_3x1-iso.csv
data-raw/pulse-chase/20151206/96h-0x0-exp.csv
data-raw/pulse-chase/20151206/96h-0x0-iso.csv
data-raw/pulse-chase/20151206/96h-0x1-exp.csv
data-raw/pulse-chase/tds-004-24-1/24h-0_3x0-exp.csv
data-raw/pulse-chase/tds-004-24-1/24h-0_3x1-exp.csv
data-raw/pulse-chase/tds-004-24-1/24h-0_3x1-iso.csv
data-raw/pulse-chase/tds-004-24-1/24h-0x0-exp.csv
data-raw/pulse-chase/tds-004-24-1/24h-0x0-iso.csv
data-raw/pulse-chase/tds-004-24-1/24h-0x1-exp.csv
data-raw/pulse-chase/tds-004-24-1/48h-0_3x0-exp.csv
data-raw/pulse-chase/tds-004-24-1/48h-0_3x1-exp.csv
data-raw/pulse-chase/tds-004-24-1/48h-0_3x1-iso.csv
data-raw/pulse-chase/tds-004-24-1/48h-0x0-exp.csv
data-raw/pulse-chase/tds-004-24-1/48h-0x0-iso.csv
data-raw/pulse-chase/tds-004-24-1/48h-0x1-exp.csv
data-raw/pulse-chase/tds-004-24-1/72h-0_3x0-exp.csv
data-raw/pulse-chase/tds-004-24-1/72h-0_3x1-exp.csv
data-raw/pulse-chase/tds-004-24-1/72h-0_3x1-iso.csv
data-raw/pulse-chase/tds-004-24-1/72h-0x0-exp.csv
data-raw/pulse-chase/tds-004-24-1/72h-0x0-iso.csv
data-raw/pulse-chase/tds-004-24-1/72h-0x1-exp.csv
data-raw/pulse-chase/tds-004-24-1/96h-0_3x0-exp.csv
data-raw/pulse-chase/tds-004-24-1/96h-0_3x1-exp.csv
data-raw/pulse-chase/tds-004-24-1/96h-0_3x1-iso.csv
data-raw/pulse-chase/tds-004-24-1/96h-0x0-exp.csv
data-raw/pulse-chase/tds-004-24-1/96h-0x0-iso.csv
data-raw/pulse-chase/tds-004-24-1/96h-0x1-exp.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_03x0.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_03x0_1.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_03x0_3.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_03x1.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_1x0.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_1x0_1.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_1x0_3.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_1x1.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_3x0.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_3x0_1.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_3x0_3.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0_3x1.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0x0.exported.FCS3.csv
data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0x0_1.exported.FCS3.csv
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data-raw/simultaneous-low-density/tds-004-08-1/Specimen_001_exp-0x1.exported.FCS3.csv
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data-raw/simultaneous/tds-004-03/Specimen_001_exp-0x1.exported.FCS3.csv
data-raw/simultaneous/tds-004-03/Specimen_001_iso-0_3x0.exported.FCS3.csv
data-raw/simultaneous/tds-004-03/Specimen_001_iso-0_3x1.exported.FCS3.csv
data-raw/simultaneous/tds-004-03/Specimen_001_iso-0x0.exported.FCS3.csv
data-raw/simultaneous/tds-004-03/Specimen_001_iso-0x1.exported.FCS3.csv
data-raw/simultaneous/tds-004-03/Specimen_001_unstained-0_3x0.exported.FCS3.csv
data-raw/simultaneous/tds-004-03/Specimen_001_unstained-0x0.exported.FCS3.csv
data-raw/simultaneous/tds-004-03/Specimen_001_unstained-0x1.exported.FCS3.csv
manuscript/.gitignore
manuscript/costimulation_significance.xlsx
manuscript/render_plots.R
vignettes/m1-to-m2.Rmd
vignettes/m2-to-m1.Rmd
vignettes/mfi.Rmd
vignettes/pulse-chase.Rmd
vignettes/simul-timecourse.Rmd
vignettes/simultaneous.Rmd
