In WendyLiuLab/BiactivationFlow: What the package does (short line)

library(FlowAnalysis)
library(magrittr)
library(dplyr)
library(ggplot2)
names(m2_m1)
names(m2_sus_m1)

2D density plots

Wash-out

m2_m1 %>% filter(antibody=="exp") %>% render_density_plots()

M2 sustained

m2_sus_m1 %>% filter(antibody=="exp") %>% render_density_plots()

Median plots

Wash-out

For each experiment:

m2_m1_medians = make_medians(m2_m1)
render_median_plots(m2_m1_medians)

Summarized:

normalized_m2_m1 = normalize_by_positive_controls(m2_m1)
normalized_m2_m1_medians = make_medians(normalized_m2_m1)
render_summary_median_plots(normalized_m2_m1_medians)

M2 sustained

For each experiment:

m2_sus_m1_medians = make_medians(m2_sus_m1)
render_median_plots(m2_sus_m1_medians)

Summarized:

normalized_m2_sus_m1 = normalize_by_positive_controls(m2_sus_m1)
normalized_m2_sus_m1_medians = make_medians(normalized_m2_sus_m1)
render_summary_median_plots(normalized_m2_sus_m1_medians)

WendyLiuLab/BiactivationFlow documentation built on May 9, 2019, 10:56 p.m.