heatMapPlot: heatMapPlot

In WilsonImmunologyLab/LinQseq: Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity

Description

plot heatmap of ADT and selected RNA features of cell clusters

Usage

heatMapPlot(
  object = NULL,
  adt.feature = NULL,
  rna.feature = NULL,
  group.by = NULL,
  adt.label = TRUE,
  rna.label = FALSE,
  label.hjust = 0.1,
  label.size = 5,
  height.rel = 1,
  legend = FALSE
)

Arguments

object	seurat object
adt.feature	ADT features used for plot
rna.feature	RNA features used for plot
group.by	cell clusters
adt.label	annotate ADT features on HEATmap (TRUE or FALSE)
rna.label	annotate RNA features on HEATmap (TRUE or FALSE)
label.hjust	hjust for ADT labels, number between 0 and 1
label.size	font size of ADT labels
height.rel	reletive height of RNA compare to ADT. Default 1 means equal height. set to null , the height will be set according to number of features
legend	show legend or not. TRUE or FALSE

WilsonImmunologyLab/LinQseq documentation built on Dec. 29, 2021, 8:15 p.m.