highCorrelatedGenePlot: highCorrelatedGenePlot

In WilsonImmunologyLab/LinQseq: Integrate information from both transcriptome and cell surface protein signals to better identify cell heterogeneity

Description

order all cells by the gene expression level of a specific gene, and explorer the gene expression profiles for highly corrolated genes or a group of user choosed genes

Usage

highCorrelatedGenePlot(
  object = NULL,
  target.gene = NULL,
  coef = "spearman",
  genes = NULL,
  topx = 20,
  group.by = "ident",
  colors = c("gray", "red")
)

Arguments

object	Seurat object
target.gene	target gene user want focus on
coef	coef methods: spearman, pearson or kendall
genes	user's choice gene list
topx	number of genes that highly correlated with target gene
group.by	cell clusters
colors	colors for gene expression

WilsonImmunologyLab/LinQseq documentation built on Dec. 29, 2021, 8:15 p.m.