data-raw/Alexandrov_2020/syn.pancreas/sa.sa.COMPOSITE/3.run.SA.R
In WuyangFF95/SynSigRun: Run Mutational Signature Analysis Software Packages Using Mutational Spectra generated by SynSigGen
# Put this file in <top.level.dir>/sa.sa.COMPOSITE and run Rscript 3.run.SA.R
maxK.for.SA <- 30
library(SynSig)
library(ICAMS)
cat("\n\nRunning, maxK.for.SA is", maxK.for.SA, "\n\n")
RNGkind(kind = "L'Ecuyer-CMRG")
set.seed(888)
reval <- SignatureAnalyzer4MatchedCatalogs(
num.runs = 20,
signatureanalyzer.code.dir = "/home/gmssgr/bin/SignatureAnalyzer.052418/",
dir.root = "..",
slice = 3,
overwrite = FALSE,
maxK = maxK.for.SA,
mc.cores = 20
)
WuyangFF95/SynSigRun documentation built on Oct. 7, 2022, 1:16 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
# Put this file in <top.level.dir>/sa.sa.COMPOSITE and run Rscript 3.run.SA.R
maxK.for.SA <- 30
library(SynSig)
library(ICAMS)
cat("\n\nRunning, maxK.for.SA is", maxK.for.SA, "\n\n")
RNGkind(kind = "L'Ecuyer-CMRG")
set.seed(888)
reval <- SignatureAnalyzer4MatchedCatalogs(
num.runs = 20,
signatureanalyzer.code.dir = "/home/gmssgr/bin/SignatureAnalyzer.052418/",
dir.root = "..",
slice = 3,
overwrite = FALSE,
maxK = maxK.for.SA,
mc.cores = 20
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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