Transfer: Algorithm for a fast calculation of the Transfer index
In XPHenry/Netfrac: Netfrac - Community distance calculation within sequence similarity networks
Description
Usage
Arguments
Examples
View source: R/transfer_dist.R
Description
The Transfer index can be used to calculate the proportion of species/sequences of community X that have been
affected by horizontal gene transfers from species/sequences of community Y. The Transfer index is assymetric.
If the threshold alpha (0<alpha<1) is satisfied, the distance is incremented. The operation is repeated for every
node of the network. The result is a pairwise matrix reporting the Transfer index for each pair of species
communities.
Usage
1
Transfer(graph)
Arguments
graph
The igraph object
Examples
1
Transfer(net_a)
XPHenry/Netfrac documentation built on Jan. 29, 2020, 12:14 p.m.
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Description Usage Arguments Examples
View source: R/transfer_dist.R
Description
The Transfer index can be used to calculate the proportion of species/sequences of community X that have been affected by horizontal gene transfers from species/sequences of community Y. The Transfer index is assymetric. If the threshold alpha (0<alpha<1) is satisfied, the distance is incremented. The operation is repeated for every node of the network. The result is a pairwise matrix reporting the Transfer index for each pair of species communities.
Usage
1 | Transfer(graph)
|
Arguments
graph |
The igraph object |
Examples
1 | Transfer(net_a)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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