Description Usage Arguments Examples
View source: R/transfer_dist.R
The Transfer index can be used to calculate the proportion of species/sequences of community X that have been affected by horizontal gene transfers from species/sequences of community Y. The Transfer index is assymetric. If the threshold alpha (0<alpha<1) is satisfied, the distance is incremented. The operation is repeated for every node of the network. The result is a pairwise matrix reporting the Transfer index for each pair of species communities.
1 | Transfer(graph)
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graph |
The igraph object |
1 | Transfer(net_a)
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