dist_paths: Shortest path distances

In XPHenry/Netfrac: Netfrac - Community distance calculation within sequence similarity networks

Description

Takes as input the network as well as the species communities to be compared and gives as output the pairwise distance matrix between species communities. The use of the NetFrac function is recommended if the global distances (between all pair of communities) are needed.

Usage

dist_paths(x, col1, col2, distance = "paths", paths = "single", info = NULL, type = "graph", maxcores = 1)

Arguments

x	The igraph object to be analyzed
col1	Community one
col2	Community two
distance	Distances that are implemented in NetFrac. See also the NetFrac function
paths	Take into account all possible shortest paths or only one
info	Information about the tree if the input is a tree
type	Tree or network
maxcores	Number of parallel cores to be used for calculation (one by default)

See Also

NetFrac

XPHenry/Netfrac documentation built on Jan. 29, 2020, 12:14 p.m.