API for XikunHan/metabolomicsR
Tools for Metabolomics Data
| Global functions | |
|---|---|
| Metabolite | Man page |
| Metabolite-class | Man page |
| Metabolite2maplet | Man page Source code |
| QC_pipeline | Man page Source code |
| QC_pipeline_df | Man page Source code |
| QCmatrix_norm | Man page Source code |
| RSD | Man page Source code |
| anno_hmdb | Man page Source code |
| assayData | Man page |
| assayData,Metabolite-method | Man page |
| assayData<- | Man page |
| assayData<-,Metabolite-method | Man page |
| batch_norm | Man page Source code |
| batch_norm_df | Man page Source code |
| bridge | Man page Source code |
| calculate_column_constant | Man page Source code |
| check_pkg | Source code |
| column_missing_rate | Man page Source code |
| column_missing_rate.Metabolite | Man page Source code |
| column_missing_rate.default | Man page Source code |
| correlation | Man page Source code |
| create_Metabolite | Man page Source code |
| df_plasma | Man page |
| f_injection_reorder | Source code |
| featureData | Man page |
| featureData,Metabolite-method | Man page |
| featureData<- | Man page |
| featureData<-,Metabolite-method | Man page |
| filter_column_constant | Man page Source code |
| filter_column_constant.Metabolite | Man page Source code |
| filter_column_constant.default | Man page Source code |
| filter_column_missing_rate | Man page Source code |
| filter_column_missing_rate.Metabolite | Man page Source code |
| filter_column_missing_rate.default | Man page Source code |
| filter_row_missing_rate | Man page Source code |
| filter_row_missing_rate.Metabolite | Man page Source code |
| filter_row_missing_rate.default | Man page Source code |
| fit_cox | Man page Source code |
| fit_glmer | Man page Source code |
| fit_lm | Man page Source code |
| fit_lme | Man page Source code |
| fit_lmer | Man page |
| fit_logistic | Man page Source code |
| fit_poisson | Man page Source code |
| genuMet_makefeature | Man page Source code |
| head_tail | Source code |
| impute | Man page Source code |
| impute.Metabolite | Man page Source code |
| impute.data.frame | Man page Source code |
| impute.default | Man page Source code |
| impute_kNN | Man page Source code |
| inverse_rank_transform | Man page Source code |
| is_outlier | Man page Source code |
| load_data | Man page Source code |
| load_excel | Man page Source code |
| maplet2Metabolite | Man page Source code |
| merge_data | Man page Source code |
| missing_rate | Source code |
| modelling_norm | Man page Source code |
| nearestQC_norm | Man page Source code |
| outlier_rate | Man page Source code |
| outlier_rate.Metabolite | Man page Source code |
| outlier_rate.data.frame | Man page Source code |
| outlier_rate.default | Man page Source code |
| pareto_scale | Man page Source code |
| paste5 | Source code |
| plot_Metabolite | Man page Source code |
| plot_PCA | Man page Source code |
| plot_QC | Man page Source code |
| plot_ROC | Man page Source code |
| plot_UMAP | Man page Source code |
| plot_injection_order | Man page Source code |
| plot_tsne | Man page Source code |
| plot_volcano | Man page Source code |
| regression | Man page Source code |
| regression_each | Man page |
| regression_each_as_outcome | Man page |
| replace_outlier | Man page Source code |
| replace_outlier.Metabolite | Man page Source code |
| replace_outlier.data.frame | Man page Source code |
| replace_outlier.default | Man page Source code |
| row_missing_rate | Man page Source code |
| row_missing_rate.Metabolite | Man page Source code |
| row_missing_rate.default | Man page Source code |
| run_PCA | Man page Source code |
| sampleData | Man page |
| sampleData,Metabolite-method | Man page |
| sampleData<- | Man page |
| sampleData<-,Metabolite-method | Man page |
| save_data_txt | Man page Source code |
| save_data_xls | Man page Source code |
| show,Metabolite-method | Man page |
| subset | Man page Source code |
| subset.Metabolite | Man page Source code |
| transformation | Man page Source code |
| update_Metabolite | Man page Source code |
