plot_Metabolite: plot a Metabolite object

In XikunHan/metabolomicsR: Tools for Metabolomics Data

plot a Metabolite object

Description

Plot a Metabolite object including boxplot (more to add.).

Usage

plot_Metabolite(
  object,
  plot = "boxplot",
  x = "NEG",
  feature_name = NULL,
  color = "NEG",
  shape = "NEG",
  fill = "NEG",
  random_select = 16,
  size = 0.6,
  n_row = 1,
  n_col = 1,
  ylab = "featureID",
  height = 10,
  width = 10,
  save_to_file = NULL
)

Arguments

object	A Metabolite object.
plot	type of plot, current support 'boxplot' and 'betweenstats'.
x	The x-axis coordinate.
feature_name	A vector of selected metabolites to plot. If NULL, will randomly select 16 (default) metabolites to plot.
color	A column in '@sampleData' to show the color of points.
shape	A column in '@sampleData' to show the shape of points.
fill	A column in '@sampleData' to show the 'fill' for histogram.
random_select	An integer, number of randomly selected metabolites to plot.
size	Point size.
n_row	Number of rows of subfigures for 'betweenstats'
n_col	Number of columns of subfigures for 'betweenstats'
ylab	Column name to annotate the y-axis in 'betweenstats' (eg. "BIOCHEMICAL"), default column: "featureID".
height	Height of the figure.
width	Width of the figure.
save_to_file	Path to save the figure.

Value

A boxplot of a Metabolite object

XikunHan/metabolomicsR documentation built on Oct. 14, 2024, 3:18 p.m.