Files in XikunHan/metabolomicsR
Tools for Metabolomics Data
.DS_Store
.RData
.Rbuildignore
.Rhistory
.github/workflows/pkgdown.yaml
.gitignore
CRAN-SUBMISSION
DESCRIPTION
NAMESPACE
NEWs.md
R/data.R
R/dimensionality_reduction.R
R/generics.R
R/process.R
R/regression.R
R/utilities.R
R/visualization.R
README.Rmd
README.md
_pkgdown.yml
data/df_plasma.rda
docs/404.html
docs/NEWs.html
docs/articles/Introduction.html
docs/articles/Introduction_files/figure-html/unnamed-chunk-10-1.png
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docs/articles/index.html
docs/authors.html
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.0/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.0/bootstrap.min.css
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js
docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.1.3/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Metabolite-class.html
docs/reference/Metabolite2maplet.html
docs/reference/QC_pipeline.html
docs/reference/QCmatrix_norm.html
docs/reference/RSD.html
docs/reference/Rplot001.png
docs/reference/anno_hmdb.html
docs/reference/assayData.html
docs/reference/assayData_set.html
docs/reference/batch_norm.html
docs/reference/bridge.html
docs/reference/column_missing_rate.html
docs/reference/correlation.html
docs/reference/create_Metabolite.html
docs/reference/df_plasma.html
docs/reference/featureData.html
docs/reference/featureData_set.html
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docs/reference/figures/workflow.png
docs/reference/filter_column_constant.html
docs/reference/filter_column_missing_rate.html
docs/reference/filter_row_missing_rate.html
docs/reference/fit_lm.html
docs/reference/genuMet_makefeature.html
docs/reference/impute.html
docs/reference/index.html
docs/reference/inverse_rank_transform.html
docs/reference/is_outlier.html
docs/reference/load_data.html
docs/reference/load_excel.html
docs/reference/maplet2Metabolite.html
docs/reference/merge_data.html
docs/reference/modelling_norm.html
docs/reference/nearestQC_norm.html
docs/reference/outlier_rate.html
docs/reference/pareto_scale.html
docs/reference/plot_Metabolite.html
docs/reference/plot_PCA.html
docs/reference/plot_QC.html
docs/reference/plot_ROC.html
docs/reference/plot_UMAP.html
docs/reference/plot_injection_order.html
docs/reference/plot_tsne.html
docs/reference/plot_volcano.html
docs/reference/regression.html
docs/reference/replace_outlier.html
docs/reference/row_missing_rate.html
docs/reference/run_PCA.html
docs/reference/sampleData.html
docs/reference/sampleData_set.html
docs/reference/save_data.html
docs/reference/save_data_txt.html
docs/reference/save_data_xls.html
docs/reference/show-Metabolite-method.html
docs/reference/subset.html
docs/reference/transformation.html
docs/reference/update_Metabolite.html
docs/search.json
docs/sitemap.xml
inst/.DS_Store
inst/extdata/12345-Results.csv.gz
inst/extdata/QMDiab_metabolomics_OrigScale.xlsx
inst/extdata/clinical_data.csv
man/.DS_Store
man/Metabolite-class.Rd
man/Metabolite2maplet.Rd
man/QC_pipeline.Rd
man/QC_pipeline_df.Rd
man/QCmatrix_norm.Rd
man/RSD.Rd
man/anno_hmdb.Rd
man/assayData.Rd
man/assayData_set.Rd
man/batch_norm.Rd
man/batch_norm_df.Rd
man/bridge.Rd
man/column_missing_rate.Rd
man/correlation.Rd
man/create_Metabolite.Rd
man/df_plasma.Rd
man/featureData.Rd
man/featureData_set.Rd
man/figures/README-unnamed-chunk-17-1.png
man/figures/README-unnamed-chunk-17-2.png
man/figures/README-unnamed-chunk-18-1.png
man/figures/README-unnamed-chunk-19-1.png
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man/figures/README-unnamed-chunk-29-2.png
man/figures/README-unnamed-chunk-29-3.png
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man/figures/README-unnamed-chunk-30-2.png
man/figures/README-unnamed-chunk-30-3.png
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man/figures/README-unnamed-chunk-41-1.png
man/figures/README-unnamed-chunk-41-2.png
man/figures/README-unnamed-chunk-42-1.png
man/figures/workflow.png
man/filter_column_constant.Rd
man/filter_column_missing_rate.Rd
man/filter_row_missing_rate.Rd
man/fit_lm.Rd
man/genuMet_makefeature.Rd
man/impute.Rd
man/inverse_rank_transform.Rd
man/is_outlier.Rd
man/load_data.Rd
man/load_excel.Rd
man/maplet2Metabolite.Rd
man/merge_data.Rd
man/modelling_norm.Rd
man/nearestQC_norm.Rd
man/outlier_rate.Rd
man/pareto_scale.Rd
man/plot_Metabolite.Rd
man/plot_PCA.Rd
man/plot_QC.Rd
man/plot_ROC.Rd
man/plot_UMAP.Rd
man/plot_injection_order.Rd
man/plot_tsne.Rd
man/plot_volcano.Rd
man/regression.Rd
man/replace_outlier.Rd
man/row_missing_rate.Rd
man/run_PCA.Rd
man/sampleData.Rd
man/sampleData_set.Rd
man/save_data_txt.Rd
man/save_data_xls.Rd
man/show-Metabolite-method.Rd
man/subset.Rd
man/transformation.Rd
man/update_Metabolite.Rd
omnipathr-log/omnipathr-20240930-1438.log
omnipathr-log/omnipathr-20240930-1500.log
omnipathr-log/omnipathr-20241001-1434.log
omnipathr-log/omnipathr-20241004-1107.log
tests/testthat.R
tests/testthat/test-metabolomicsR.R
vignettes/Introduction.Rmd
