Man pages for YC3/mirNet
microRNA netowrk analyses
| CFinder | Identify potential confounding factors or batch effects |
| comEigenGene | Computing eigen-genes or eigen-microRNAs from detected... |
| createBipartiteNet | Plot microRNA-gene interaction network |
| createBipartiteNet2 | Plot microRNA-gene interaction network II |
| createUnipartiteNet | Plot microRNA co-expression network. |
| DoLmFit | Apply multivariable linear regression for each row of input... |
| DoTest | Apply two-sample t-test for each row of input data matrix. |
| DoWilcoxonTest | Apply two-sample Wilcoxon tests (‘Mann-Whitney’ test) for... |
| eigenCor | Computing eigen-gene or eigen-microRNAs based connectivity |
| pairComp | Do differential gene/microRNA expression analysis |
| plot_ExpSd | Plot the stadard deviation against average experssion of... |
| plot_ExpSd_Sig | Plot the stadard deviation against average experssion of... |
| rmaNormalizer | Normalize RNA-seq or miRNA-seq dataset with RMA method |
| tcgaConvRownames | Convert the rownames of a data matrix from 'ENSEMBL IDs' to... |
| tcgaNormalizer | Normalize RNA-seq or miRNA-seq dataset |
| tcgaTableGenerator | Generate gene/microRNA expression matrix from single... |
| tcgaTableSplit | Split a data matrix into two according to Normal-Cancer... |
