tcgaTableSplit: Split a data matrix into two according to Normal-Cancer...

In YC3/mirNet: microRNA netowrk analyses

Description

tcgaTableSplit splits input dataset into two substes: Normal and Cancer, and returns a list.

Usage

tcgaTableSplit(data, sampleSheet)

Arguments

data	A data matrix, can be the output from tcgaTableGenerator or tcgaConvRownames.
sampleSheet	The table containing clinical informations of samples downloaded from GDC together with sequencing data files.

Value

A list, with entries are matrices of normal/cancer samples in the original dataset.

See Also

tcgaTableGenerator for generating a gene expression data matrix from single FPKM files downloaded from GDC Data Portal, tcgaConvRownames for converting rownames of a data matrix.

Examples

tcgaTableSplit(exp.luad.m, sampleSheet = 'clinical_LUAD/TCGA_samples_LUAD.tsv')

YC3/mirNet documentation built on Sept. 3, 2020, 3:25 a.m.