tcgaConvRownames: Convert the rownames of a data matrix from 'ENSEMBL IDs' to...

Description Usage Arguments Value See Also Examples

View source: R/tcgaConvRownames.R

Description

tcgaConvRownames converts the rownames of a data matrix (gene identifiers) from 'ENSEMBL IDs' to 'HUGO Gene Symbols', and then summarize the expression of duplicated genes by taking the average.

Usage

1

Arguments

data

A data matrix, with rows referring to genes and columns to samples. Can be the output from tcgaTableGenerator.

Value

A data matrix, with gene identifiers converted from 'ENSEMBL IDs' to 'HUGO Gene Symbols'.

See Also

tcgaTableGenerator for generating a gene expression data matrix from single FPKM files downloaded from GDC Data Portal.

Examples

1

YC3/mirNet documentation built on Sept. 3, 2020, 3:25 a.m.