add_summary: Add Summary Statistics onto a ggplot.

In YTLogos/ggpubr: 'ggplot2' Based Publication Ready Plots

Description

add summary statistics onto a ggplot.

Usage

add_summary(p, fun = "mean_se", error.plot = "pointrange",
  color = "black", fill = "white", width = NULL, shape = 19, size = 1,
  data = NULL, position = position_dodge(0.8))

mean_se_(x, error.limit = "both")

mean_sd(x, error.limit = "both")

mean_ci(x, ci = 0.95, error.limit = "both")

mean_range(x, error.limit = "both")

median_iqr(x, error.limit = "both")

median_mad(x, error.limit = "both")

median_range(x, error.limit = "both")

Arguments

p	a ggplot on which you want to add summary statistics.
fun	a function that is given the complete data and should return a data frame with variables ymin, y, and ymax. Allowed values are one of: "mean", "mean_se", "mean_sd", "mean_ci", "mean_range", "median", "median_iqr", "median_mad", "median_range".
error.plot	plot type used to visualize error. Allowed values are one of c("pointrange", "linerange", "crossbar", "errorbar", "upper_errorbar", "lower_errorbar", "upper_pointrange", "lower_pointrange", "upper_linerange", "lower_linerange"). Default value is "pointrange".
color	point or outline color.
fill	fill color. Used only whne error.plot = "crossbar".
width	numeric value between 0 and 1 specifying bar or box width. Example width = 0.8. Used only when error.plot is one of c("crossbar", "errorbar").
shape	point shape. Allowed values can be displayed using the function show_point_shapes().
size	numeric value in [0-1] specifying point and line size.
data	a data.frame to be displayed. If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot.
position	position adjustment, either as a string, or the result of a call to a position adjustment function. Used to adjust position for multiple groups.
x	a numeric vector.
error.limit	allowed values are one of ("both", "lower", "upper", "none") specifying whether to plot the lower and/or the upper limits of error interval.
ci	the percent range of the confidence interval (default is 0.95).

Functions

• add_summary: add summary statistics onto a ggplot.

• mean_se_: returns the mean and the error limits defined by the standard error. We used the name mean_se_() to avoid masking mean_se().

• mean_sd: returns the mean and the error limits defined by the standard deviation.

• mean_ci: returns the mean and the error limits defined by the confidence interval.

• mean_range: returns the mean and the error limits defined by the range = max - min.

• median_iqr: returns the median and the error limits defined by the interquartile range.

• median_mad: returns the median and the error limits defined by the median absolute deviation.

• median_range: returns the median and the error limits defined by the range = max - min.

Examples

# Basic violin plot
p <- ggviolin(ToothGrowth, x = "dose", y = "len", add = "none")
p

# Add median_iqr
add_summary(p, "mean_sd")

YTLogos/ggpubr documentation built on May 3, 2019, 9:04 p.m.