GetFragmentationEvents: Get data frame of fragmentation events in requested LC-MS...

In Yaroslav-Lyutvinskiy/MZAccessR: R Interface to mzAccess Web-API

Description

Get data frame of fragmentation events in requested LC-MS area Corresponds to mzAccess web-service API function GetFragmentationEvents

Usage

GetFragmentationEvents(FileName, MZLow, MZHigh, RTLow, RTHigh)

Arguments

FileName	- Name of original raw mass spectrometry file.
MZLow	- Minimum parent ion m/z value to be included in event list
MZHigh	- Maximum parent ion m/z value to be included in event list
RTLow	- Minimum retention time value to be included in event list
RTHigh	- Maximum retention time value to be included in event list

Value

Data frame of fragmentation events inside of desired LC-MS region Includes Scan Number (to use with function GetSpectraByScanNumber), Mass of parent ion, Retention time of fragmentation event MSOrder - if 2 - that is MSMS spectra, if more it is high order MSN spectra Desc - description of spectrum

Examples

GetFragmentationEvents("Agilent_QTOF_plasma_1.d",200,250,6,6.5)

Yaroslav-Lyutvinskiy/MZAccessR documentation built on May 10, 2019, 12:06 a.m.