FPSmultiOmicsSigEnrich: Function enrichment

In Yelab2020/FPSOmics: Ferroptosis Score and associated multi-Omics

Function enrichment

Description

Study the differences of different ferroptosis status in cancer hallmarks, KEGG pathway by Gene Set Enrichment Analysis (GSEA) and GO, KEGG enrichment.

Usage

FPSmultiOmicsSigEnrich(input_PSM, input_gs_kegg, temp_folder)

Arguments

input_PSM	data.frame of the PSM result from FPSmultiOmicsSig function
input_gs_kegg	the genelist of two column for GSEA enrichemnt, the first column is term and the second column is gene
temp_folder	the temporal folder for output result

Value

table and figures of GO, KEGG and GSEA enrichemnt result

Examples

data(m4_input_gs_kegg,package='FPSOmics')
data(m4_input_PSM,package='FPSOmics')
enrichment_result=FPSmultiOmicsSigEnrich(m4_input_PSM,m4_input_gs_kegg,'temp_folder')

Yelab2020/FPSOmics documentation built on May 14, 2022, 8:59 p.m.