PGS-package: Penalized GEE with Grid Search
In YinanZheng/PGS: Penalized GEE with Grid Search
Description
Details
Author(s)
References
Description
Penalized Generalized Estimating Equations method with grid search for association study of high-dimensional data with repeated measures.
Details
BJdata is used to load and preview PGS built-in example datasets BJmirna and BJlung.
pgsfit is used to fit and determine the best results from penalized GEE method across tunning parameter grid.
sis is used to conduct sure independent screening across high-dimensional variables.
Author(s)
Yinan Zheng [aut, cre], Fei Zhe [aut], Haixiang Zhang [ctb], Yi Li
[cph], Lifang Hou [cph]
Maintainer: Yinan Zheng <y-zheng@northwestern.edu>
References
Zheng Y, Fei Z, Zhang W, Starren JB, Liu L, Baccarelli AA, Li Y, Hou L. PGS: a tool for association study of high-dimensional microRNA expression data with repeated measures. Bioinformatics. 2014;30(19):2802-7. doi: 10.1093/bioinformatics/btu396. PubMed PMID: 24947752; PubMed Central PMCID: PMC4173025. (pubmed)
Wang L, Zhou J, Qu A. Penalized generalized estimating equations for high-dimensional longitudinal data analysis. Biometrics. 2012;68(2):353-60. doi: 10.1111/j.1541-0420.2011.01678.x. PubMed PMID: 21955051. (pubmed)
YinanZheng/PGS documentation built on May 29, 2021, 10:07 p.m.
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Description Details Author(s) References
Description
Penalized Generalized Estimating Equations method with grid search for association study of high-dimensional data with repeated measures.
Details
BJdata is used to load and preview PGS built-in example datasets BJmirna and BJlung.
pgsfit is used to fit and determine the best results from penalized GEE method across tunning parameter grid.
sis is used to conduct sure independent screening across high-dimensional variables.
Author(s)
Yinan Zheng [aut, cre], Fei Zhe [aut], Haixiang Zhang [ctb], Yi Li [cph], Lifang Hou [cph]
Maintainer: Yinan Zheng <y-zheng@northwestern.edu>
References
Zheng Y, Fei Z, Zhang W, Starren JB, Liu L, Baccarelli AA, Li Y, Hou L. PGS: a tool for association study of high-dimensional microRNA expression data with repeated measures. Bioinformatics. 2014;30(19):2802-7. doi: 10.1093/bioinformatics/btu396. PubMed PMID: 24947752; PubMed Central PMCID: PMC4173025. (pubmed)
Wang L, Zhou J, Qu A. Penalized generalized estimating equations for high-dimensional longitudinal data analysis. Biometrics. 2012;68(2):353-60. doi: 10.1111/j.1541-0420.2011.01678.x. PubMed PMID: 21955051. (pubmed)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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