API for YinanZheng/REMP
Repetitive Element Methylation Prediction
| Global functions | |
|---|---|
| .QTF | Source code |
| .UCSCrefGeneDownload | Source code |
| .addannot | Source code |
| .aggregateNeib | Source code |
| .aggregateREMP | Source code |
| .bploadLibraryQuiet | Source code |
| .changeColNames | Source code |
| .clps | Source code |
| .countCoveredGene | Source code |
| .countREByGene | Source code |
| .coverageStats_GENE | Source code |
| .coverageStats_RE | Source code |
| .dataCheck | Source code |
| .decodeEntrez | Source code |
| .decodeSymbol | Source code |
| .forwardSlashPath | Source code |
| .guessArrayType | Source code |
| .guessDataType | Source code |
| .guessREtype | Source code |
| .iblkrow | Source code |
| .iblkrow_dup | Source code |
| .initiateAH | Source code |
| .isGROrStop | Source code |
| .isREMParcelOrStop | Source code |
| .isREMProductOrStop | Source code |
| .isRSetOrStop | Source code |
| .liftOver_Hg19toHg38 | Source code |
| .liftOver_Hg38toHg19 | Source code |
| .loadMethy | Source code |
| .methyMatrix | Source code |
| .modelTrain | Source code |
| .onAttach | Source code |
| .oneWayFlank | Source code |
| .predictREMP | Source code |
| .printMsgArray | Source code |
| .showCpGcountbyChr | Source code |
| .showGeneStats | Source code |
| .showPredictionSummary | Source code |
| .showQCSummary | Source code |
| .showREMParceInfo | Source code |
| .showREMPinfo | Source code |
| .showREStats | Source code |
| .showSampleID | Source code |
| .showTrainingStats | Source code |
| .timeTrace | Source code |
| .toBeta | Source code |
| .toIndicator | Source code |
| .toM | Source code |
| .twoWayFlank | Source code |
| .vRECpGPos | Source code |
| .webDownload | Source code |
| Alu.hg19.demo | Man page |
| Alu.hg38.demo | Man page |
| GRannot | Man page Source code |
| REMP | Man page |
| REMP-package | Man page |
| REMParcel | Man page Source code |
| REMParcel-class | Man page |
| REMProduct | Man page Source code |
| REMProduct-class | Man page |
| decodeAnnot | Man page |
| decodeAnnot,REMProduct-method | Man page |
| details | Man page |
| details,REMProduct-method | Man page |
| fetchRMSK | Man page Source code |
| fetchRefSeqGene | Man page Source code |
| findRECpG | Man page Source code |
| getBackend | Man page Source code |
| getGM12878 | Man page Source code |
| getILMN | Man page |
| getILMN,REMParcel-method | Man page |
| getParcelInfo | Man page |
| getParcelInfo,REMParcel-method | Man page |
| getRE | Man page |
| getRE,REMParcel-method | Man page |
| getRECpG | Man page |
| getRECpG,REMParcel-method | Man page |
| getRefGene | Man page |
| getRefGene,REMParcel-method | Man page |
| grooMethy | Man page Source code |
| initREMP | Man page Source code |
| remp | Man page Source code |
| rempAggregate | Man page |
| rempAggregate,REMProduct-method | Man page |
| rempAnnot | Man page |
| rempAnnot,REMProduct-method | Man page |
| rempB | Man page |
| rempB,REMProduct-method | Man page |
| rempCombine | Man page |
| rempCombine,REMProduct,REMProduct-method | Man page |
| rempImp | Man page |
| rempImp,REMProduct-method | Man page |
| rempM | Man page |
| rempM,REMProduct-method | Man page |
| rempQC | Man page |
| rempQC,REMProduct-method | Man page |
| rempStats | Man page |
| rempStats,REMProduct-method | Man page |
| rempTemplate | Man page Source code |
| rempTrim | Man page |
| rempTrim,REMProduct-method | Man page |
| remp_options | Man page Source code |
| remp_reset | Man page Source code |
| remplot | Man page |
| remplot,REMProduct-method | Man page |
| remprofile | Man page Source code |
| saveParcel | Man page |
| saveParcel,REMParcel-method | Man page |
