Man pages for YinanZheng/REMP
Repetitive Element Methylation Prediction
| Alu.hg19.demo | Subset of Alu genomic location dataset (hg19) |
| Alu.hg38.demo | Subset of Alu genomic location dataset (hg38) |
| fetchRefSeqGene | Get RefSeq gene database |
| fetchRMSK | Get RE database from RepeatMasker |
| findRECpG | Find RE-CpG genomic location given RE ranges information |
| getBackend | Get BiocParallel back-end |
| getGM12878 | Get methylation data of HapMap LCL sample GM12878 profiled by... |
| GRannot | Annotate genomic ranges data with gene region information. |
| grooMethy | Groom methylation data to fix potential data issues |
| initREMP | RE Annotation Database Initialization |
| options | Set or get options for REMP package |
| remp | Repetitive element methylation prediction |
| REMParcel-class | REMParcel instances |
| REMP-package | Repetitive Element Methylation Prediction |
| REMProduct-class | REMProduct instances |
| remprofile | Extract DNA methylation data profiled in RE |
| rempTemplate | Prepare data template for REMP |
