reexports: Objects exported from other packages

In YuLab-SMU/ggtree: an R package for visualization of tree and annotation data

Objects exported from other packages

Description

These objects are imported from other packages. Follow the links below to see their documentation.

ape

read.tree, rtree

aplot

plot_list

dplyr

collapse

ggfun

%<+%, identify, td_filter, td_mutate, td_unnest

ggplot2

aes, fortify, geom_label, geom_point, geom_text, ggplot, ggsave, guide_legend, margin, scale_color_manual, scale_colour_manual, scale_fill_manual, scale_x_continuous, theme, xlim

grid

arrow, unit

magrittr

%>%

tidytree

groupClade, groupOTU, MRCA, nodeid, nodelab

Examples

nwk <- system.file("extdata", "sample.nwk", package="treeio")
tree <- read.tree(nwk)
p <- ggtree(tree)
dd <- data.frame(taxa=LETTERS[1:13],
                   place=c(rep("GZ", 5), rep("HK", 3), rep("CZ", 4), NA),
             value=round(abs(rnorm(13, mean=70, sd=10)), digits=1))
row.names(dd) <- NULL
p %<+% dd + geom_text(aes(color=place, label=label), hjust=-0.5)

YuLab-SMU/ggtree documentation built on Nov. 3, 2024, 4:15 p.m.