tree-layout: layout_rectangular

In YuLab-SMU/ggtree: an R package for visualization of tree and annotation data

layout_rectangular

Description

transform circular/fan layout to rectangular layout

transform rectangular layout to circular layout

transform rectangular/circular layout to inward circular layout

transform rectangular/circular layout to fan layout

transform rectangular layout to dendrogram layout

Usage

layout_rectangular()

layout_circular()

layout_inward_circular(xlim = NULL)

layout_fan(angle = 180)

layout_dendrogram()

Arguments

xlim	setting x limits, which will affect the center space of the tree
angle	open tree at specific angle

Author(s)

Guangchuang Yu

Examples

tree <- rtree(20)
p <- ggtree(tree, layout = "circular") + layout_rectangular()
tree <- rtree(20)
p <- ggtree(tree)
p + layout_circular()
tree <- rtree(20)
p <- ggtree(tree)
p + layout_inward_circular(xlim=4) + geom_tiplab(hjust=1)
tree <- rtree(20)
p <- ggtree(tree)
p + layout_fan(angle=90)
tree <- rtree(20)
p <- ggtree(tree)
p + p + layout_dendrogram()

YuLab-SMU/ggtree documentation built on Nov. 3, 2024, 4:15 p.m.