Files in YuanlongLiu/CALDER
What the package does (short line)
.DS_Store
.gitattributes
DESCRIPTION
LICENSE
NAMESPACE
R/CALDER_hierarchy.R
R/CALDER_main.R
R/HRG_MLE_each_compartment_fun.R
R/HighResolution2Low.R
R/LikelihoodRatioTest_fun.R
R/RcppExports.R
R/bisecting_kmeans.R
R/call_domains.R
R/compartment_PCA.R
R/compartment_data_generation_fun.R
R/general_functions.R
R/generate_compartments_bed_fun.R
R/get_ccA_atanh.R
R/get_detailed_full_tree.R
R/my_hclust.R
R/post_processing_nested_domains.R
R/prunning.R
R/trim_tree_adaptive_top_down.R
R/zigzag_nested_domain.R
README.md
Read-and-delete-me
img/CALDER_methods.png
img/IGV_results.png
inst/extdata/TxDb.Hsapiens.UCSC.hg19.knownGene.Rdata
inst/extdata/mat_chr22_10kb_ob.txt.gz
man/.Rapp.history
man/CALDERdev-package.Rd
src/CALDERdev.so
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/matrix_multiplication_fun.cpp
src/matrix_multiplication_fun.o
src/zigzag_loglik_ancestors_v4.5.cpp
src/zigzag_loglik_ancestors_v4.5.o
