getKEGGTIDGeneSeq: KEGG Database Additional API - Get mutiple nucleotide acid...

In YulongNiu/KEGGAPI: A package for providing KEGG databases API in R

Description

Get mutiple protein and gene sequences from KEGG T number in fasta format. As there is no direct API for retrieving the sequence from T number, for example "T10017:100009". The fasta sequence is extract from a webpage like "http://www.genome.jp/dbget-bin/www_bget?-f+-n+a+t10017:100009".

Usage

getKEGGTIDGeneSeq(TIDs, seqType = "aaseq", n = 1)

Arguments

TIDs	A vector of T number IDs. for the protein or gene.
seqType	Choose nucleotide acid (ntseq) or amino acid (aaseq) seqences, and the default is amino acid sequences.
n	The number of CPUs or processors, and the default value is 1.

Value

A BStringSet

Author(s)

Yulong Niu [e-mail]

References

http://www.genome.jp/dbget-bin/www_bget?-f+-n+a+t10017:100009

http://www.genome.jp/dbget-bin/www_bget?-f+-n+n+t10017:100009

See Also

getKEGGGeneSeq

Examples

multiSeqs <- getKEGGTIDGeneSeq(c('T10017:100009', 'T10017:100036', 'T10017:100044'), n = 2)

YulongNiu/KEGGAPI documentation built on May 10, 2019, 1:12 a.m.