getKEGGSpeInfo: Get KEGG organism basic information

In YulongNiu/KEGG_API: A package for providing KEGG databases API in R

Description

KEGG Database Additional API - Get KEGG organism basic information

Usage

getKEGGSpeInfo(specID)

Arguments

specID

KEGSS species org code or T number , for example "hsa" or "T01001".

Details

The KEGG organism basic information is retrieved from the webpage. If references are included, a four-row matrix ("Reference", "Authors", "Title", "Journal") will be returned. If chromosome are included, a three-row matrix ("Chromosome", "Sequence", and "Length") will be returned. The similar process will be applied to plasmid.

Value

A list contains basic information.

Author(s)

Yulong Niu [e-mail]

References

http://www.genome.jp/kegg-bin/show_organism?org=T01001

Examples

hasInfo <- getKEGGSpeInfo('hsa')
draInfo <- getKEGGSpeInfo('dra')

YulongNiu/KEGG_API documentation built on May 10, 2019, 1:12 a.m.