KEGGMotifList: Get motif list from KEGG.
In YulongNiu/KEGG_API: A package for providing KEGG databases API in R

Description Usage Arguments Details Value Author(s) See Also Examples

KEGG Database Additional API - Get genes processing certain motif

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getKEGGMotifList(motifName, enforceURL = FALSE)

getKEGGMotifList2(motifName, enforceURL = FALSE)

`motifName`	A single KEGG motif ID
`enforceURL`	whether to enfoce get get url until the results returned. The default value is "FALSE".

Get all the gene having certain motif.

A matrix of KEGG genes and description

A vector of protein names including UniProt and SWISS-PROT. Not all these "protID" have KEGG IDs. KEGG uses UniProt and SWISS-PROT for gene UniProt annotation.

Yulong Niu niuylscu@gmail.com

convKEGG

motifMat <- getKEGGMotifList('pf:DUF3675')
pfUniprot <- getKEGGMotifList2('pf:DUF3675')
## Not run: 
# convert uniprot ID to KEGG IDs
pfUniprot <- paste0('uniprot:', pfUniprot)
pfGeneID <- convKEGG('genes', pfUniprot, convertType = 'identity')

## End(Not run)