getNCBITaxo: Get NCBI taxonomy information

Description Usage Arguments Details Value Author(s) References Examples

View source: R/getNCBI.R

Description

NCBI Database API - Get NCBI taxonomy information from given NCBI taxonomy IDs

Usage

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getNCBITaxo(NCBITaxoIDs, n = 1, maxEach = 10000)

Arguments

NCBITaxoIDs

A vector of NCBI taxonomy IDs.

n

The number of CPUs or processors, and the default value is 1.

maxEach

The maximum retrieve number in each visit. The ESearch, EFetch, and ESummary, the max number in one query is 10,000.

Details

Get NCBI taxonomy information.

Value

A list containing taxonomy information for each ID.

Author(s)

Yulong Niu [email protected]

References

Entrez Programming Utilities Help http://www.ncbi.nlm.nih.gov/books/NBK25499/

Examples

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## with two cores
tax3 <- getNCBITaxo(c('9606', '511145', '797302'), n = 2)

YulongNiu/NCBIAPI documentation built on June 3, 2017, 10:46 a.m.