getNCBITaxo: Get NCBI taxonomy information
In YulongNiu/NCBI_API: A package for providing NCBI databases API in R
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
NCBI Database API - Get NCBI taxonomy information from given NCBI taxonomy IDs
Usage
1
getNCBITaxo(NCBITaxoIDs, n = 1, maxEach = 10000)
Arguments
NCBITaxoIDs
A vector of NCBI taxonomy IDs.
n
The number of CPUs or processors, and the default value is 1.
maxEach
The maximum retrieve number in each visit. The ESearch, EFetch, and ESummary, the max number in one query is 10,000.
Details
Get NCBI taxonomy information.
Value
A list containing taxonomy information for each ID.
Author(s)
Yulong Niu niuylscu@gmail.com
References
Entrez Programming Utilities Help http://www.ncbi.nlm.nih.gov/books/NBK25499/
Examples
1
2
## with two cores
tax3 <- getNCBITaxo(c('9606', '511145', '797302'), n = 2)
YulongNiu/NCBI_API documentation built on Nov. 22, 2021, 3:25 a.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
NCBI Database API - Get NCBI taxonomy information from given NCBI taxonomy IDs
Usage
1 | getNCBITaxo(NCBITaxoIDs, n = 1, maxEach = 10000)
|
Arguments
NCBITaxoIDs |
A vector of NCBI taxonomy IDs. |
n |
The number of CPUs or processors, and the default value is 1. |
maxEach |
The maximum retrieve number in each visit. The ESearch, EFetch, and ESummary, the max number in one query is 10,000. |
Details
Get NCBI taxonomy information.
Value
A list containing taxonomy information for each ID.
Author(s)
Yulong Niu niuylscu@gmail.com
References
Entrez Programming Utilities Help http://www.ncbi.nlm.nih.gov/books/NBK25499/
Examples
1 2 | ## with two cores
tax3 <- getNCBITaxo(c('9606', '511145', '797302'), n = 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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