Description Details Author(s) Examples
an R package for retrieving pure population samples and estimating in a sample the proportion of the different contingents based on the pure profiles.
Package: | WISP |
Type: | Package |
Version: | 2.3 |
Date: | 2019-01-06 |
License: | GPL>2 |
Yuna Blum, Aurelien de Reynies
Maintainer: Yuna Blum <yuna.blum@gmail.com>
1 2 3 4 5 6 7 8 | data(dataWISP)
resPure = WISP.getPureCentro(data= dataWISP$datapure,cl= dataWISP$clpure, nb_markers_selection = "custom", nb_markers_max_perClass = 50, pureSamples_deltaTopWeights = 0.6, plot_heatmap = TRUE, col_purePop = c("Epure"="blue","normal"="grey","Spure"="green"), sum_LessThanOne = FALSE)
resW = WISP.getWeight(dataWISP$data, resPure$genescentro, sum_LessThanOne = FALSE)
WISP.getPlot(resW, annotsup = dataWISP$histo, plot_type = "heatmap", col_purePop = c("Epure"="blue","normal"="grey","Spure"="green"))
WISP.getPlot(resW, annotsup = dataWISP$histo, plot_type = "barplot", col_purePop = c("Epure"="blue","normal"="grey","Spure"="green"))
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