API for Yves-CHEN/sCNAphase
Esitmate tumor CN profile and tumor cellularity.

Global functions
addChroms Source code
binomP Source code
binomPvec Source code
calcBaf Source code
calcC Source code
calcEmiss Source code
calcEmissAll Source code
calcGC Source code
calcLL Source code
calcLLsum Source code
calcSigAll Source code
calcSigAll1 Source code
calcSigAllBack Source code
calcSigLeft Source code
calcSigRight Source code
chi Source code
collapse Source code
combineCounts Source code
cumulSig Source code
displayParas Source code
extractChroms Source code
filtering Source code
genGenotypes Source code
genSegFile Source code
genSegFile, produceDSKY Man page
genVCFFile Source code
genseg Source code
getLengths Source code
ggplotQQ Source code
heatm Source code
inferCNA Man page Man page Man page Source code
inferStates Source code
inferStatesWrap Source code
joinNeighbours Source code
loadBamRegions Source code
loadFreq Source code
logQQ Source code
makeInitialCNDist Source code
maxll Source code
mergeADs Source code
mergeByDist Source code
mergeByDistML Source code
mergeByDistTest Source code
mergeByDistTest2 Source code
mergeUsingML Source code
multiArmSig Source code
objF Source code
p2chisq Source code
plotMAF Source code
plotMatrix Source code Source code
plotPred Source code
probF Source code
produceCytoPlot Source code
produceDSKY Source code
qb Source code
readChroms Source code
readVCF Source code
runForPloidy Source code
sCNAPhase,SCNAPhase Man page
sCNAPhase,SCNAPhase, sCNAphase, sCNAphase-package Man page
sampBeta Source code
segHMM2 Source code
Yves-CHEN/sCNAphase documentation built on June 3, 2017, 10:47 a.m.