Files in ZBMEDLABS/epilepsyontologysimilarities
Epilepsy Ontology Similarities
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/calcAggregates.R
R/calcSimilarities.R
R/calcStatsAgainstDrugBank.R
R/calcStatsAgainstMeSH.R
R/calcStatsEpilepsyOntologies.R
R/doThePlotAgainstAllEpilepsy.R
R/doThePlotAgainstDrugBank.R
R/doThePlotAgainstMeSH.R
R/doThePlotAggregatedDrugBank.R
R/doThePlotAggregatedEpilepsy.R
R/doThePlotAggregatedMeSH.R
R/doThePlotDrugVectors.R
R/gridArrangeCall.R
R/hashmapVis.R
R/loadOntStatsIntoEnv.R
R/main.R
R/processATC.R
R/readDictionaryStatsFromMongo.R
R/vennplot.R
R/writeResults.R
README.Rmd
README.md
epilepsyontologysimilarities.Rproj
inst/misc/ATCMeSH.png
inst/misc/ATCTopKSpace.png
inst/misc/AgainstAll.png
inst/misc/AggregatedDrugBank.png
inst/misc/AggregatedEpilepsie.png
inst/misc/AggregatedEpilepsy.png
inst/misc/AggregatedMeSH.png
inst/misc/CosineDrugBank.png
inst/misc/CosineEpilepsy.png
inst/misc/CosineMesH.png
inst/misc/DiceDrugBank.png
inst/misc/DiceEpilepsy.png
inst/misc/DiceMeSH.png
inst/misc/EpilepsyVectors.PNG
inst/misc/JaccardDrugBank.png
inst/misc/JaccardEpilepsy.png
inst/misc/JaccardMeSH.png
inst/misc/Tanimoto.png
inst/misc/TanimotoBaseline.png
inst/misc/VennEpilepsyOntologies.png
inst/misc/WorkflowEpilepsy.svg
inst/misc/againstAll.eps
inst/misc/againstDrugBank.eps
inst/misc/againstDrugBank.png
inst/misc/againstMeSH.eps
inst/misc/againstMeSH.png
inst/misc/aggregatedplots.png
inst/misc/all.eps
inst/misc/complexworkflow.PNG
inst/misc/dntk.csv
inst/misc/dntk_s.csv
inst/misc/drugvectorfive.png
inst/misc/drugvectorsecintersectionepilepsy.png
inst/misc/drugvectorsecunionepilepsy.png
inst/misc/neurodrugfreqepi.png
inst/misc/neurodrugfreqepso.png
inst/misc/neurodrugfreqesso.png
inst/misc/neurodrugfreqmesh.png
inst/misc/neurodrugvector.png
inst/misc/neurodrugvectorfive.png
inst/misc/neurospace.csv
inst/misc/neurotable.tex
inst/misc/similarityWorkflow.png
inst/misc/test.txt
inst/misc/workflow.pdf
inst/misc/workflow.png
inst/misc/workflow.pptx
inst/plots/atcfrequencies/epilontatcfreq.png
inst/plots/atcfrequencies/epsoatcfreq.png
inst/plots/atcfrequencies/essoatcfreq.png
inst/plots/atcfrequencies/meshatcfreq.png
inst/plots/drugvectors/approveddrugvectorepilepsyvsmeshTop100.png
inst/plots/drugvectors/approveddrugvectorepilepsyvsmeshTop1000.png
inst/plots/drugvectors/drugvectorepilepsyvsmeshTop100.png
inst/plots/drugvectors/drugvectorepilepsyvsmeshTop1000.png
inst/resources/db-atc.map
inst/resources/drugbankatc-fourthlevel.map
inst/resources/drugbankatc-secondlevel.map
inst/resources/drugbankatc-thirdlevel.map
inst/resources/tepi.rda
inst/resources/tepso.rda
inst/resources/tesso.rda
inst/results/neurotable.tex
inst/similaritydata/dictfreq/DrugBank.rda
inst/similaritydata/dictfreq/EPILONT.rda
inst/similaritydata/dictfreq/ESSO.rda
inst/similaritydata/dictfreq/EpSO.rda
inst/similaritydata/dictfreq/mesh.rda
inst/similaritydata/drugbankframes/cosinedrugbankplot.rda
inst/similaritydata/drugbankframes/dcosinedrugbank.rda
inst/similaritydata/drugbankframes/ddicedrugbank.rda
inst/similaritydata/drugbankframes/dicedrugbankplot.rda
inst/similaritydata/drugbankframes/djaccarddrugbank.rda
inst/similaritydata/drugbankframes/drugbankgridplot.rda
inst/similaritydata/drugbankframes/jaccarddrugbankplot.rda
inst/similaritydata/mesh-epilepsy/meshep.csv
inst/similaritydata/mesh-epilepsy/meshep.json
inst/similaritydata/meshframes/cosinemeshplot.rda
inst/similaritydata/meshframes/dcosinemesh.rda
inst/similaritydata/meshframes/ddicemesh.rda
inst/similaritydata/meshframes/dicemeshplot.rda
inst/similaritydata/meshframes/djaccardmesh.rda
inst/similaritydata/meshframes/jaccardmeshplot.rda
inst/similaritydata/meshframes/meshgridplot.rda
man/aggregatedPlotDrugBank.Rd
man/aggregatedPlotEpilepsie.Rd
man/aggregatedPlotMeSH.Rd
man/calcCosine.Rd
man/calcDice.Rd
man/calcJaccard.Rd
man/cosine.Rd
man/countATC.Rd
man/createATCBarChart.Rd
man/createBaseTable.Rd
man/createCosineFrameDrugBank.Rd
man/createCosineFrameESSO.Rd
man/createCosineFrameEpSO.Rd
man/createCosineFrameMeSH.Rd
man/createCosinePlotAll.Rd
man/createCosinePlotDrugBank.Rd
man/createCosinePlotMeSH.Rd
man/createDashVectorForATC.Rd
man/createDiceFrameDrugBank.Rd
man/createDiceFrameESSO.Rd
man/createDiceFrameEpSO.Rd
man/createDiceFrameMeSH.Rd
man/createDicePlotAll.Rd
man/createDicePlotDrugBank.Rd
man/createDicePlotMeSH.Rd
man/createJaccardFrameDrugBank.Rd
man/createJaccardFrameESSO.Rd
man/createJaccardFrameEpSO.Rd
man/createJaccardFrameMeSH.Rd
man/createJaccardPlotAll.Rd
man/createJaccardPlotDBMeSH.Rd
man/createJaccardPlotDrugBank.Rd
man/createJaccardPlotMeSH.Rd
man/createJaccardPlotMeSHFive.Rd
man/createListFromVennVector.Rd
man/createTanimotoBaseline.Rd
man/create_metrics.Rd
man/create_stats.Rd
man/dice.Rd
man/doFullPlot.Rd
man/drawVennPlot.Rd
man/filterApprovedDrugs.Rd
man/filterNeuroDrugs.Rd
man/genDictListFromRawFreq.Rd
man/getTermMatrix.Rd
man/jaccard.Rd
man/loadDrugBank.Rd
man/loadEPILONT.Rd
man/loadESSO.Rd
man/loadEpSO.Rd
man/loadMeSH.Rd
man/main.Rd
man/readAtcMapIntoHashMapAtcCodesAtcNames.Rd
man/readAtcMapIntoHashMapDrugNamesAtcCodes.Rd
man/readSecondLevelATC.Rd
man/readThirdLevelATC.Rd
man/sortHashMapByValue.Rd
tests/testthat.R
tests/testthat/test_calcCosine.R
tests/testthat/test_calcDice.R
tests/testthat/test_calcJaccard.R
tests/testthat/test_cosine.R
tests/testthat/test_createCosineFrameDrugBank.R
tests/testthat/test_createCosineFrameESSO.R
tests/testthat/test_createCosineFrameEpSO.R
tests/testthat/test_createCosineFrameMeSH.R
tests/testthat/test_createDiceFrameDrugBank.R
tests/testthat/test_createDiceFrameESSO.R
tests/testthat/test_createDiceFrameEpSO.R
tests/testthat/test_createDiceFrameMeSH.R
tests/testthat/test_createJaccardFrameDrugBank.R
tests/testthat/test_createJaccardFrameESSO.R
tests/testthat/test_createJaccardFrameEpSO.R
tests/testthat/test_createJaccardFrameMeSH.R
tests/testthat/test_create_metrics.R
tests/testthat/test_create_stats.R
tests/testthat/test_dice.R
tests/testthat/test_jaccard.R
vignettes/vignette.R
vignettes/vignette.Rmd
vignettes/vignette.html
