Files in ZBMEDLABS/epilepsyontologysimilarities
Epilepsy Ontology Similarities

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/calcAggregates.R R/calcSimilarities.R R/calcStatsAgainstDrugBank.R R/calcStatsAgainstMeSH.R R/calcStatsEpilepsyOntologies.R R/doThePlotAgainstAllEpilepsy.R R/doThePlotAgainstDrugBank.R R/doThePlotAgainstMeSH.R R/doThePlotAggregatedDrugBank.R R/doThePlotAggregatedEpilepsy.R R/doThePlotAggregatedMeSH.R R/doThePlotDrugVectors.R R/gridArrangeCall.R R/hashmapVis.R R/loadOntStatsIntoEnv.R R/main.R R/processATC.R R/readDictionaryStatsFromMongo.R R/vennplot.R R/writeResults.R README.Rmd README.md
epilepsyontologysimilarities.Rproj
inst/misc/ATCMeSH.png
inst/misc/ATCTopKSpace.png
inst/misc/AgainstAll.png
inst/misc/AggregatedDrugBank.png
inst/misc/AggregatedEpilepsie.png
inst/misc/AggregatedEpilepsy.png
inst/misc/AggregatedMeSH.png
inst/misc/CosineDrugBank.png
inst/misc/CosineEpilepsy.png
inst/misc/CosineMesH.png
inst/misc/DiceDrugBank.png
inst/misc/DiceEpilepsy.png
inst/misc/DiceMeSH.png
inst/misc/EpilepsyVectors.PNG
inst/misc/JaccardDrugBank.png
inst/misc/JaccardEpilepsy.png
inst/misc/JaccardMeSH.png
inst/misc/Tanimoto.png
inst/misc/TanimotoBaseline.png
inst/misc/VennEpilepsyOntologies.png
inst/misc/WorkflowEpilepsy.svg
inst/misc/againstAll.eps
inst/misc/againstDrugBank.eps
inst/misc/againstDrugBank.png
inst/misc/againstMeSH.eps
inst/misc/againstMeSH.png
inst/misc/aggregatedplots.png
inst/misc/all.eps
inst/misc/complexworkflow.PNG
inst/misc/dntk.csv
inst/misc/dntk_s.csv
inst/misc/drugvectorfive.png
inst/misc/drugvectorsecintersectionepilepsy.png
inst/misc/drugvectorsecunionepilepsy.png
inst/misc/neurodrugfreqepi.png
inst/misc/neurodrugfreqepso.png
inst/misc/neurodrugfreqesso.png
inst/misc/neurodrugfreqmesh.png
inst/misc/neurodrugvector.png
inst/misc/neurodrugvectorfive.png
inst/misc/neurospace.csv
inst/misc/neurotable.tex
inst/misc/similarityWorkflow.png
inst/misc/test.txt
inst/misc/workflow.pdf
inst/misc/workflow.png
inst/misc/workflow.pptx
inst/plots/atcfrequencies/epilontatcfreq.png
inst/plots/atcfrequencies/epsoatcfreq.png
inst/plots/atcfrequencies/essoatcfreq.png
inst/plots/atcfrequencies/meshatcfreq.png
inst/plots/drugvectors/approveddrugvectorepilepsyvsmeshTop100.png
inst/plots/drugvectors/approveddrugvectorepilepsyvsmeshTop1000.png
inst/plots/drugvectors/drugvectorepilepsyvsmeshTop100.png
inst/plots/drugvectors/drugvectorepilepsyvsmeshTop1000.png
inst/resources/db-atc.map
inst/resources/drugbankatc-fourthlevel.map
inst/resources/drugbankatc-secondlevel.map
inst/resources/drugbankatc-thirdlevel.map
inst/resources/tepi.rda
inst/resources/tepso.rda
inst/resources/tesso.rda
inst/results/neurotable.tex
inst/similaritydata/dictfreq/DrugBank.rda
inst/similaritydata/dictfreq/EPILONT.rda
inst/similaritydata/dictfreq/ESSO.rda
inst/similaritydata/dictfreq/EpSO.rda
inst/similaritydata/dictfreq/mesh.rda
inst/similaritydata/drugbankframes/cosinedrugbankplot.rda
inst/similaritydata/drugbankframes/dcosinedrugbank.rda
inst/similaritydata/drugbankframes/ddicedrugbank.rda
inst/similaritydata/drugbankframes/dicedrugbankplot.rda
inst/similaritydata/drugbankframes/djaccarddrugbank.rda
inst/similaritydata/drugbankframes/drugbankgridplot.rda
inst/similaritydata/drugbankframes/jaccarddrugbankplot.rda
inst/similaritydata/mesh-epilepsy/meshep.csv
inst/similaritydata/mesh-epilepsy/meshep.json
inst/similaritydata/meshframes/cosinemeshplot.rda
inst/similaritydata/meshframes/dcosinemesh.rda
inst/similaritydata/meshframes/ddicemesh.rda
inst/similaritydata/meshframes/dicemeshplot.rda
inst/similaritydata/meshframes/djaccardmesh.rda
inst/similaritydata/meshframes/jaccardmeshplot.rda
inst/similaritydata/meshframes/meshgridplot.rda
man/aggregatedPlotDrugBank.Rd man/aggregatedPlotEpilepsie.Rd man/aggregatedPlotMeSH.Rd man/calcCosine.Rd man/calcDice.Rd man/calcJaccard.Rd man/cosine.Rd man/countATC.Rd man/createATCBarChart.Rd man/createBaseTable.Rd man/createCosineFrameDrugBank.Rd man/createCosineFrameESSO.Rd man/createCosineFrameEpSO.Rd man/createCosineFrameMeSH.Rd man/createCosinePlotAll.Rd man/createCosinePlotDrugBank.Rd man/createCosinePlotMeSH.Rd man/createDashVectorForATC.Rd man/createDiceFrameDrugBank.Rd man/createDiceFrameESSO.Rd man/createDiceFrameEpSO.Rd man/createDiceFrameMeSH.Rd man/createDicePlotAll.Rd man/createDicePlotDrugBank.Rd man/createDicePlotMeSH.Rd man/createJaccardFrameDrugBank.Rd man/createJaccardFrameESSO.Rd man/createJaccardFrameEpSO.Rd man/createJaccardFrameMeSH.Rd man/createJaccardPlotAll.Rd man/createJaccardPlotDBMeSH.Rd man/createJaccardPlotDrugBank.Rd man/createJaccardPlotMeSH.Rd man/createJaccardPlotMeSHFive.Rd man/createListFromVennVector.Rd man/createTanimotoBaseline.Rd man/create_metrics.Rd man/create_stats.Rd man/dice.Rd man/doFullPlot.Rd man/drawVennPlot.Rd man/filterApprovedDrugs.Rd man/filterNeuroDrugs.Rd man/genDictListFromRawFreq.Rd man/getTermMatrix.Rd man/jaccard.Rd man/loadDrugBank.Rd man/loadEPILONT.Rd man/loadESSO.Rd man/loadEpSO.Rd man/loadMeSH.Rd man/main.Rd man/readAtcMapIntoHashMapAtcCodesAtcNames.Rd man/readAtcMapIntoHashMapDrugNamesAtcCodes.Rd man/readSecondLevelATC.Rd man/readThirdLevelATC.Rd man/sortHashMapByValue.Rd tests/testthat.R tests/testthat/test_calcCosine.R tests/testthat/test_calcDice.R tests/testthat/test_calcJaccard.R tests/testthat/test_cosine.R tests/testthat/test_createCosineFrameDrugBank.R tests/testthat/test_createCosineFrameESSO.R tests/testthat/test_createCosineFrameEpSO.R tests/testthat/test_createCosineFrameMeSH.R tests/testthat/test_createDiceFrameDrugBank.R tests/testthat/test_createDiceFrameESSO.R tests/testthat/test_createDiceFrameEpSO.R tests/testthat/test_createDiceFrameMeSH.R tests/testthat/test_createJaccardFrameDrugBank.R tests/testthat/test_createJaccardFrameESSO.R tests/testthat/test_createJaccardFrameEpSO.R tests/testthat/test_createJaccardFrameMeSH.R tests/testthat/test_create_metrics.R tests/testthat/test_create_stats.R tests/testthat/test_dice.R tests/testthat/test_jaccard.R vignettes/vignette.R vignettes/vignette.Rmd
vignettes/vignette.html
ZBMEDLABS/epilepsyontologysimilarities documentation built on Oct. 10, 2018, 9:27 p.m.