Epilepsy Ontology Similarities

aggregatedPlotDrugBank | Create aggregated plot with mean and standard deviation of... |

aggregatedPlotEpilepsie | Create a plot object that aggregates cosine, dice, and... |

aggregatedPlotMeSH | Create aggregated plot with mean and standard deviation of... |

calcCosine | Calculate the cosine similarity metric for two lists a and b |

calcDice | Calculate the dice similarity metric for two lists a and b |

calcJaccard | Calculate the jaccard coefficient for two lists a and b |

cosine | Calculate cosine similarity metric |

countATC | Count the ATC second level classes for all drug names in the... |

createATCBarChart | Creates a plot object for a given sorted hashmap. |

createBaseTable | Create the final resulting data frame |

createCosineFrameDrugBank | Creates data frame for plotting the cosine coefficients... |

createCosineFrameEpSO | Creates data frame for plotting the cosine coefficients... |

createCosineFrameESSO | Creates data frame for plotting the cosine coefficients... |

createCosineFrameMeSH | Creates data frame for plotting the cosine coefficients... |

createCosinePlotAll | Creates the plot for all cosine coefficients against drugbank |

createCosinePlotDrugBank | Creates the plot for all cosine coefficients against drugbank |

createCosinePlotMeSH | Creates the plot for all cosine coefficients against mesh |

createDashVectorForATC | Creates a vector with an X at each position where a drug from... |

createDiceFrameDrugBank | Creates data frame for plotting the dice coefficients against... |

createDiceFrameEpSO | Creates data frame for plotting the dice coefficients against... |

createDiceFrameESSO | Creates data frame for plotting the dice coefficients against... |

createDiceFrameMeSH | Creates data frame for plotting the dice coefficients against... |

createDicePlotAll | Creates the plot for all dice coefficients amongst the three... |

createDicePlotDrugBank | Creates the plot for all dice coefficients against drugbank |

createDicePlotMeSH | Creates the plot for all dice coefficients against mesh |

createJaccardFrameDrugBank | Creates data frame for plotting the jaccard coefficients... |

createJaccardFrameEpSO | Creates data frame for plotting the jaccard coefficients... |

createJaccardFrameESSO | Creates data frame for plotting the jaccard coefficients... |

createJaccardFrameMeSH | Creates data frame for plotting the jaccard coefficients... |

createJaccardPlotAll | Creates the plot for all jaccard coefficients amongst the... |

createJaccardPlotDBMeSH | Creates the plot for all jaccard coefficients amongst the... |

createJaccardPlotDrugBank | Creates the plot for all jaccard coefficients against... |

createJaccardPlotMeSH | Creates the plot for all jaccard coefficients against mesh |

createJaccardPlotMeSHFive | Creates the plot for all jaccard coefficients amongst the... |

createListFromVennVector | Creates a list out of a vector |

create_metrics | Calculate required metrics for the aggregated plots against... |

create_stats | Calculate data.frame containing stats for mean, median, and... |

createTanimotoBaseline | Creates the plot for all jaccard coefficients amongst the... |

dice | Calculate dice similarity metric |

doFullPlot | Does the full plot on one page |

drawVennPlot | Draw venn diagram with example values |

filterApprovedDrugs | Filter a given list of drug names for having an ATC code, if... |

filterNeuroDrugs | Filter a given list of drug names for having an ATC code... |

genDictListFromRawFreq | Clears object that was loaded from harddrive into a list of... |

getTermMatrix | Receives a sorted hashmap with found entities from a... |

jaccard | Calculate jaccard similarity metric for two sets a and b |

loadDrugBank | Loads drugbank object from harddrive into the R environment |

loadEPILONT | Loads epilont object from harddrive into the R environment |

loadEpSO | Loads epso object from harddrive into the R environment |

loadESSO | Loads esso object from harddrive into the R environment |

loadMeSH | Loads mesh object from harddrive into the R environment |

main | Main function to call everything and produce the results |

readAtcMapIntoHashMapAtcCodesAtcNames | Processes the input file db-atc.map to form a HashMap... |

readAtcMapIntoHashMapDrugNamesAtcCodes | Processes the input file db-atc.map to form a HashMap... |

readSecondLevelATC | Read the second level ATC classes from the file... |

readThirdLevelATC | Read the third level ATC classes from the file... |

sortHashMapByValue | Sort a hashmap by its values |

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