View source: R/parallel_peak_calling.R
Run peak callings in parallel on bash sever
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | parallel_peak_calling(
coldata,
bam_dir = "./",
save_dir = "./",
autocreate = T,
parallel_num = 9,
pc_function = exomePeak2_hg19,
front_name = "pkc_",
single_base = F,
GC_correct = T,
correct_GC_bg = F,
background = "Gaussian_mixture",
qtnorm = T
)
|
coldata |
a |
bam_dir |
the directory containing the bam files. |
save_dir |
the directory to save the resulting RDS files of the |
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