parallel_peak_calling: Run peak callings in parallel on bash sever

Description Usage Arguments

View source: R/parallel_peak_calling.R

Description

Run peak callings in parallel on bash sever

Usage

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parallel_peak_calling(
  coldata,
  bam_dir = "./",
  save_dir = "./",
  autocreate = T,
  parallel_num = 9,
  pc_function = exomePeak2_hg19,
  front_name = "pkc_",
  single_base = F,
  GC_correct = T,
  correct_GC_bg = F,
  background = "Gaussian_mixture",
  qtnorm = T
)

Arguments

coldata

a data.frame which it columns containing the design information.

bam_dir

the directory containing the bam files.

save_dir

the directory to save the resulting RDS files of the


ZW-xjtlu/exomePeak2Test documentation built on Jan. 6, 2020, 3:36 p.m.