parallel_report: Run reports on peak callings in parallel with bash sever.

In ZW-xjtlu/exomePeak2Test: Easy test of the exomePeak2 performance.

Description

Run reports on peak callings in parallel with bash sever.

Usage

parallel_report(
  pkc_dir = "~/exomepeak2_test",
  pkc_prefix = "pkc_",
  pkc_suffix = ".rds",
  autocreate = TRUE,
  save_dir = "~/exomepeak2_GC_peaks",
  parallel_num = 9,
  report_function = reads_GC_plot,
  front_name = "GCreads_"
)

Arguments

pkc_dir	the directory containing the Peak calling results in RDS format.
pkc_prefix	a character of the prefix of the peakcalling result files; default "pkc_".
pkc_suffix	a character of the suffix of the peakcalling result files; default ".rds".
autocreate	a logical, TRUE if create the save_dir when it does not exist; default TRUE.
save_dir	the directory to save the reported files.
parallel_num	an integer indicates the number of parallel process created; default = 6.
report_function	a report function that takes the peak calling result as the input, and take a code string as output.
front_name	a character string define the prefixes of the saved files.
...	arguments that can be passed to the report function.

Value

multiple report files on peak calling results, which will use the same middle name.

Examples

parallel_report(
 pkc_dir = "~/exomepeak2_test"
 pkc_prefix = "pkc_",
 pkc_suffix = ".rds",
 save_dir = "~/exomepeak2_GC_peaks",
 parallel_num = 9,
 report_function = reads_GC_plot
)

ZW-xjtlu/exomePeak2Test documentation built on Jan. 6, 2020, 3:36 p.m.