get.longest.cds: Get information of longest isoform for given gene

In ZYBunnyHu/masonmd: Make Sense of Nonsense-Mediated Decay

Description

sum returns the sum of all the values present in its arguments.

Usage

get.longest.cds(gene_id, ref)

Arguments

gene_id	numeric; Entrez gene ID
numeric;	reference genome/NCBI build; ref = 37 if the mutation is called by build37/hg19, or ref = 36 if the mutation is called by build36/hg18

Details

Get the longest cds if the gene ID is given

Value

A list containing four entries:

• gene gene Entrez ID; same with the input

• txid transcript ID of the longest isoform

• seq charactor; coding sequence of the transcript

• tx infomation of the transcript in form of Txdb

Examples

library(masonmd)
get.longest.cds(gene_id = 13, ref = 37)

ZYBunnyHu/masonmd documentation built on May 10, 2019, 1:55 a.m.