get_mut_exjun: Get relative positions of exon-exon junctions in mutated gene

In ZYBunnyHu/masonmd: Make Sense of Nonsense-Mediated Decay

Description

get_mut_exjun refers relative positions of exon-exon junctions in mutated gene.

Usage

get_mut_exjun(wt_exjun, mut_start, mut_end, mut_nt)

Arguments

wt_exjun	a string that consists of 0 or 1 to indicates the positions of exon-exon junctions in the coding sequence;
mut_start	position of mutation start in chromosome
mut_end	position of mutation end in chromosome
mut_nt	nucleotides after alteration

Details

Indicate the positions of exon-exon junctions in the mutated sequence based on the mutation information and the positions of exon-exon junctions in wildtype sequence.

Value

A list containing two entries:

• mut_exjun charactor that consists of 0 and 1; 1 represents the position of junctions

• note extra note

ZYBunnyHu/masonmd documentation built on May 10, 2019, 1:55 a.m.