model_generator: constructing Model Object

In ZahraNSL/ODENEM:

Description

constructing Model Object

Usage

model_generator(
  stype,
  ti_num,
  prior.theta,
  prior.W,
  data.para,
  W.factor,
  depletion.factor,
  depletion.factor.wt,
  init.ODE,
  E_num,
  method.wt,
  stimulation.value,
  stimulation.value.wt,
  tstep
)

Arguments

stype	name of motif : "Diamond","Bifan","FeedForward","FeedBackward","ProteinCascade"
ti_num	number of time points
prior.theta	prior over observations and hidden nodes connections
prior.W	prior over W
data.para	list of parameter for data simulation: mu, sd, location, scale shape
W.factor	W=1 * W.factor
depletion.factor	diag of W
depletion.factor.wt	diag of W in WT
init.ODE	initial value of ODE
E_num	number of observations
method.wt	method for WildType state calculation: steadyState or timeSeries
stimulation.value	constant value for stimulation function
stimulation.value.wt	constant value for stimulation function in WildType case
tstep	time step length

ZahraNSL/ODENEM documentation built on Dec. 31, 2020, 6:35 p.m.