Man pages for ZhenWei10/RbashGEO
GEO raw data processing in bash.
| Check_hisat2_reports | Check the hisat2 reports under the curent working directory. |
| Chunk_submit | submit bash commands by user defined number of chunks |
| Coldata_example | The example Coldata data.frame |
| Count_from_coldata | A highly compact but easy to use function to count based on... |
| Count_SRRs | Count data and save the result |
| Rhisat2 | Generate hisat2 command in R |
| Rnohup | submit a bash commands into the qsub... |
| Rsamtools_view | Samtools views in R to filter multiple alignments |
| Rtrim_galore | generate a command for trim_galore in R |
| WgetQC | Retrive data from GEO, and run a fastqc |
