Rsamtools_view: Samtools views in R to filter multiple alignments
In ZhenWei10/RbashGEO: GEO raw data processing in bash.
Usage
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Rsamtools_view(sam_name, sam_directory = ".", sam_end = ".sam",
parallel_num = 8, flag_filter = 2816)
Examples
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sam_filenames <- gsub(".sam","",grep(".sam$",list.files(),value = T) )
sapply(
sam_filenames,
function(x){
Rsamtools_view(x,flag_filter = 2816) %>% Rnohup(.,paste0(x,"_samfilter") )
}
)
ZhenWei10/RbashGEO documentation built on May 28, 2019, 8:22 a.m.
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Usage
1 2 | Rsamtools_view(sam_name, sam_directory = ".", sam_end = ".sam",
parallel_num = 8, flag_filter = 2816)
|
Examples
1 2 3 4 5 6 7 | sam_filenames <- gsub(".sam","",grep(".sam$",list.files(),value = T) )
sapply(
sam_filenames,
function(x){
Rsamtools_view(x,flag_filter = 2816) %>% Rnohup(.,paste0(x,"_samfilter") )
}
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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