GOEA: Vectorized function to enrich GO exact terms with a list of...
In ZhenWei10/golite: Fast and simple GOEA

goea(gene_set, back_ground, orgDb, category = "BP", gene_key = "ENTREZID",
  min_bg_count = 1, max_bg_count = Inf, min_gs_count = 1,
  max_gs_count = Inf, EASE_Score = F, pvalue_correction = "BH",
  interpret_term = F, show_gene_name = F, GO_Slim = F, Slim_ss = NULL,
  Exclude_self = T)

`gene_set`	a list of character vectors contains gene IDs of the query gene sets.
`back_ground`	a character vector contains the IDs of the background genes.
`orgDb`	an `OrgDb` object defined by AnnotationDbi.
`category`	a character specifying the gene ontology category, can be one in "BP", "CC", and "MF", default "BP".
`gene_key`	a character specifying the type of the gene ID, the available types of the keys can be find using `keytypes(org.Hs.eg.db)`, default "ENTREZID".
`min_bg_count`	term minimum number of occurence in background genes; default 1.
`max_bg_count`	term maximum number of occurence in background genes; default Inf.
`min_gs_count`	term minimum number of occurence in gene set genes; default 1.
`max_gs_count`	term maximum number of occurence in gene set genes; default Inf.
`EASE_Score`	whether or not use EASE score method. (a more conservative hypergeomatric test calculation used in DAVID) for more details please refer to https://david.ncifcrf.gov/helps/functional_annotation.html#fisher, default FALSE.
`pvalue_correction`	method used for multiple hypothesis adjustment, can be one in "holm", "hochberg", "hommel", "bonferroni", "BH", "BY","fdr", and "none".
`interpret_term`	whether to let the GO term readable, default FALSE.
`show_gene_name`	whether to attach readable gene names for each GO term, default FALSE.
`GO_Slim`	whether to run GSEA only on GO slim terms (a certain subset to GO terms), default FALSE.
`Slim_ss`	a character sting of GO terms that define the scope of GO Slim. if not provided, the GO slim would be the generic subset defined in : http://geneontology.org/ontology/subsets/goslim_generic.obo
`Exclude_self`	whether the GO slim terms of its own category i.e. remove terms of c("GO:0008150","GO:0005575","GO:0003674"), default TRUE; only applied when GO_Slim = TRUE.