plotMSfeature: plotMSfeature

In Zhiqiang-PANG/OptiLCMS_web: Optimized LC-MS Spectra Processing

Description

plotMSfeature is used to plot the feature intensity of different groups

Usage

plotMSfeature(mSet = NULL, FeatureNM = 1, dpi = 72, format = "png", width = NA)

Arguments

mSet	mSet Object, should be processed aby 'PerformPeakProfiling'.
FeatureNM	Numeric, feature number in the feature table.
dpi	Numeric, to define the dpi of the figures. Default is 72. (only works for web version)
format	Character, to give the format of BPI figures ploted. Can be "jpeg", "png", "pdf", "svg", "tiff" or "ps". Default is "png". (only works for web version)

Examples

library(OptiLCMS)
data(mSet);
newPath <- dir(system.file("mzData", package = "mtbls2"),
               full.names = TRUE, recursive = TRUE)[c(10, 11, 12)]
mSet <- updateRawSpectraPath(mSet, newPath);
plotMSfeature (mSet, 1); # Here is only one group

Zhiqiang-PANG/OptiLCMS_web documentation built on May 1, 2021, 6:58 a.m.